JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM168_chr7_112757377_112795393	0/0	t0032	5183	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0033	5183	1	0	0	0	0	1	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0034	5183	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0035	5183	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0036	5175	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM169_chr2_216076919_216107783	1/1	t0001	2429	340	49	70	159	16	44	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0002	2427	27	26	1	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0003	2427	9	9	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0004	2423	5	5	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0005	2429	3	0	3	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0006	2429	2	2	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0007	2429	2	0	0	2	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0008	2427	2	2	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0009	2429	2	1	1	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0010	2429	2	0	0	2	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0011	2427	1	1	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0012	2427	1	1	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0013	2423	1	1	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0014	2429	1	1	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0015	2429	1	0	0	0	0	1	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0016	2429	1	0	1	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0017	2429	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0018	2429	1	0	1	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0019	2429	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0020	2428	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0021	2429	1	0	1	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0022	2427	1	1	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0023	2429	1	1	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	t0024	2429	1	0	0	0	0	1	copy fasta	TMEM169	chr2	216076919	216107783
TMEM170A_chr16_75438054_75469689	0/0	t0001	4593	87	6	14	51	6	10	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0002	4593	72	9	9	48	2	4	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0003	4592	38	13	8	9	2	6	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0004	4593	36	15	15	0	5	1	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0005	4593	12	0	0	10	0	2	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0006	4593	10	0	5	5	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0007	4595	10	5	0	0	0	5	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0008	4593	9	6	3	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0009	4593	6	5	1	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0010	4593	5	0	0	5	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0011	4591	5	5	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0012	4596	4	0	2	0	0	2	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0013	4591	4	4	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	1/0	t0014	4594	4	3	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0015	4593	3	0	0	3	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0016	4594	3	0	1	1	0	1	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0017	4592	3	3	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0018	4593	2	0	0	2	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0019	4593	2	2	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0020	4593	2	2	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0021	4593	2	2	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689