JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM170A_chr16_75438054_75469689	0/0	t0022	4593	2	2	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0023	4592	2	0	0	0	0	2	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0024	4605	2	0	0	0	2	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0025	4593	1	0	1	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0026	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0027	4594	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0028	4593	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0029	4594	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0030	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0031	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0032	4593	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0033	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0034	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0035	4593	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0036	4593	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0037	4594	1	0	0	0	0	1	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0038	4592	1	0	1	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0039	4592	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0040	4592	1	0	1	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0041	4592	1	0	1	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0042	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0043	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0044	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0045	4592	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0046	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0047	4578	1	0	0	0	1	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0048	4593	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0049	4595	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0050	4595	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0051	4594	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0052	4594	1	0	0	1	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0053	4593	1	0	1	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0054	4593	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0055	4593	1	0	0	0	0	1	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0056	4595	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0057	4595	1	0	1	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0058	4593	1	0	0	0	0	1	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0059	4592	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	t0060	4593	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170B_chr6_11532749_11588524	0/1	t0001	8493	99	18	19	52	2	7	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0002	8493	73	2	7	49	3	12	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0003	8493	23	10	10	0	0	3	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0004	8492	22	0	1	19	0	2	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0005	8491	18	7	0	8	0	3	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0006	8493	10	9	1	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0007	8493	9	0	0	9	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0008	8493	8	0	4	0	4	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	1/0	t0009	8493	7	5	1	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0010	8492	7	6	1	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0011	8493	5	5	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524