JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM170B_chr6_11532749_11588524	0/0	t0012	8493	5	5	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0013	8491	5	1	1	1	2	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0014	8493	5	5	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0015	8493	4	0	2	0	1	1	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0016	8492	4	0	0	0	1	3	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0017	8493	3	0	0	3	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0018	8493	3	0	0	3	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0019	8493	3	3	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0020	8492	3	2	1	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0021	8492	3	3	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0022	8493	2	0	0	2	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0023	8493	2	0	0	2	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0024	8493	2	0	0	2	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0025	8493	2	0	0	2	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0026	8492	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0027	8493	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0028	8493	1	0	0	0	0	1	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0029	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0030	8492	1	0	0	0	1	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0031	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0032	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0033	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0034	8493	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0035	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0036	8493	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0037	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0038	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0039	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0040	8493	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0041	8493	1	0	0	0	0	1	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0042	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0043	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0044	8492	1	0	0	0	0	1	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0045	8493	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0046	8493	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0047	8493	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0048	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0049	8492	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	t0050	8493	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM171_chr5_73115575_73136809	1/1	t0001	270	423	98	73	188	14	48	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	t0002	270	27	0	7	20	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM174_chr5_73168193_73180143	1/0	t0001	1030	140	50	14	61	3	11	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	t0002	1030	139	12	26	82	4	15	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/1	t0003	1030	126	16	35	53	7	14	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	t0004	1030	12	9	3	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	t0005	1030	9	5	1	2	0	1	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	t0006	1030	2	0	0	2	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	t0007	1030	2	0	0	2	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	t0008	1030	1	0	0	0	0	1	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	t0009	1030	1	0	1	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143