JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM175_chr4_927460_963656	1/1	t0001	273	280	85	56	113	7	17	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	t0002	273	49	2	7	31	2	7	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	t0003	273	42	2	1	22	3	14	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	t0004	273	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM176A_chr7_150795769_150810118	1/1	t0001	326	369	69	76	166	13	43	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	t0002	326	33	13	4	14	0	2	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	t0003	326	20	13	1	6	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	t0004	326	6	0	3	0	2	1	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	t0005	326	2	0	2	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	t0006	326	1	1	0	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	t0007	326	1	0	0	0	1	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176B_chr7_150786301_150805364	0/1	t0001	303	187	28	17	120	3	18	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	1/0	t0002	303	127	7	40	65	3	11	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0003	303	73	36	17	9	6	5	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0004	303	36	9	6	12	3	6	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0005	303	29	4	2	21	0	2	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0006	303	18	7	4	2	1	4	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0007	303	3	3	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0008	303	1	0	0	1	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0009	303	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	t0010	303	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM177_chr2_119674201_119687118	0/1	t0001	428	281	55	62	114	9	40	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	1/0	t0002	428	71	23	10	30	1	6	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	t0003	428	19	15	0	4	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	t0004	428	2	0	0	2	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	t0005	428	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	t0006	428	1	1	0	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	t0007	428	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM178A_chr2_39660917_39722963	1/1	t0001	771	283	80	59	104	6	32	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	t0002	772	7	7	0	0	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	t0003	771	2	0	0	2	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	t0004	771	1	0	1	0	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	t0005	771	1	0	0	1	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	t0006	774	1	0	0	1	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	t0007	772	1	1	0	0	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178B_chr7_141069064_141485380	0/0	t0001	9838	15	5	6	2	0	2	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0002	9826	3	3	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0003	9830	3	3	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0004	9830	3	2	1	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0005	9838	3	3	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0006	9842	3	3	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0007	9842	3	1	0	0	0	2	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0008	9842	3	3	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0009	9838	2	2	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0010	9825	2	2	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0011	9838	2	1	0	1	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0012	9842	2	0	0	2	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0013	9842	2	0	1	1	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0014	9842	2	1	1	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	t0015	9844	2	2	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380