JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM179_chr14_104585864_104609772	0/0	t0013	2647	4	0	0	4	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0014	2647	3	0	0	3	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0015	2647	3	0	0	3	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0016	2647	2	2	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0017	2647	2	2	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0018	2647	2	2	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0019	2647	2	2	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0020	2675	1	0	0	1	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0021	2647	1	0	0	1	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0022	2647	1	0	0	1	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0023	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0024	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0025	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0026	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0027	2647	1	0	1	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0028	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0029	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0030	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0031	2647	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	t0032	2645	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM17_chr2_62495218_62511195	0/1	t0001	1059	144	29	17	87	3	7	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0002	1057	111	18	21	57	6	9	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	1/0	t0003	1058	77	16	10	29	5	16	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0004	1057	51	1	12	35	0	3	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0005	1058	43	0	22	15	0	6	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0006	1058	36	26	4	1	2	3	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0007	1058	2	2	0	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0008	1057	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0009	1058	1	0	0	0	0	1	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0010	1056	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0011	1059	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0012	1058	1	0	0	0	1	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0013	1058	1	0	0	0	0	1	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0014	1059	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0015	1058	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0016	1059	1	1	0	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0017	1058	1	0	0	0	1	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0018	1058	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	t0019	1059	1	1	0	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM181_chr6_158555091_158640429	1/1	t0001	3676	175	30	38	76	7	22	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0002	3676	47	15	3	25	0	4	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0003	3676	33	14	13	0	1	5	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0004	3674	27	9	15	1	0	2	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0005	3674	14	14	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0006	3676	7	1	3	0	3	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0007	3676	3	0	0	3	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0008	3675	3	0	0	3	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0009	3676	2	0	0	0	0	2	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0010	3676	2	0	0	2	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0011	3657	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429