JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM181_chr6_158555091_158640429	0/0	t0012	3676	1	0	0	0	0	1	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0013	3676	1	0	0	0	1	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0014	3676	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0015	3676	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0016	3676	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0017	3676	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0018	3676	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0019	3676	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0020	3676	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0021	3676	1	0	0	0	0	1	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0022	3689	1	0	1	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0023	3674	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0024	3674	1	0	1	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0025	3674	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0026	3674	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0027	3674	1	0	0	0	0	1	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0028	3674	1	0	1	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0029	3676	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0030	3676	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	t0031	3676	1	0	1	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM182_chr2_102757031_102822679	1/1	t0001	2899	110	16	32	37	8	15	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0002	2898	48	4	15	24	1	4	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0003	2901	42	10	3	24	2	3	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0004	2902	21	2	1	7	0	11	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0005	2902	16	5	2	9	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0006	2907	11	0	4	2	2	3	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0007	2904	10	0	1	7	2	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0008	2901	9	9	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0009	2899	8	3	0	5	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0010	2898	7	0	0	7	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0011	2905	7	0	0	7	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0012	2901	6	6	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0013	2901	5	0	4	0	1	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0014	2898	5	1	0	4	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0015	2898	4	2	1	0	0	1	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0016	2907	3	3	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0017	2908	3	0	0	3	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0018	2896	3	0	0	3	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0019	2898	2	0	0	2	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0020	2904	2	2	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0021	2910	2	2	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0022	2910	2	2	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0023	2908	2	0	0	2	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0024	2905	2	2	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0025	2899	2	2	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0026	2901	1	0	0	1	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0027	2898	1	0	0	0	0	1	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0028	2904	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0029	2901	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0030	2904	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679