JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM182_chr2_102757031_102822679	0/0	t0031	2898	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0032	2904	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0033	2907	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0034	2898	1	0	0	1	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0035	2901	1	0	0	1	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0036	2910	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0037	2901	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0038	2904	1	0	0	0	0	1	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0039	2902	1	0	0	0	0	1	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0040	2902	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0041	2905	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0042	2902	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0043	2899	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0044	2899	1	0	1	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0045	2899	1	0	1	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0046	2905	1	0	1	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0047	2905	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0048	2899	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	t0049	2901	1	1	0	0	0	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM183A_chr1_203002374_203029848	1/1	t0001	1901	177	45	31	81	2	16	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0002	1902	82	25	12	19	7	19	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0003	1902	54	2	6	42	3	1	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0004	1900	48	2	6	35	1	4	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0005	1901	10	1	4	0	3	2	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0006	1903	9	3	3	1	1	1	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0007	1901	8	0	8	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0008	1901	8	8	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0009	1904	5	5	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0010	1901	5	0	0	5	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0011	1901	4	0	1	2	1	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0012	1901	2	0	1	1	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0013	1904	2	1	1	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0014	1902	2	2	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0015	1903	2	2	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0016	1900	1	0	1	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0017	1903	1	0	0	1	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0018	1902	1	0	0	0	0	1	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0019	1902	1	0	0	0	0	1	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0020	1900	1	0	0	1	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0021	1901	1	0	0	1	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0022	1902	1	0	0	1	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0023	1903	1	1	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0024	1901	1	1	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	t0025	1900	1	0	0	0	0	1	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM184A_chr7_1537235_1561205	0/0	t0001	4811	152	15	26	93	10	8	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0002	4810	86	4	17	47	3	15	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0003	4812	17	2	9	5	1	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0004	4811	17	16	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0005	4811	11	8	1	1	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0006	4810	8	5	3	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205