JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM184A_chr7_1537235_1561205	0/0	t0007	4811	7	0	0	7	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0008	4812	6	1	2	3	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/1	t0009	4810	6	0	4	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0010	4809	4	3	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0011	4809	4	3	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0012	4810	4	3	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0013	4811	3	0	0	3	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0014	4811	3	3	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0015	4811	3	3	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0016	4811	3	0	0	3	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0017	4809	3	0	0	0	0	3	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0018	4810	2	2	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0019	4811	2	0	1	0	1	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0020	4811	2	0	0	2	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0021	4811	2	0	0	0	0	2	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0022	4810	2	0	0	2	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0023	4811	2	0	0	2	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0024	4809	2	2	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0025	4809	2	1	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0026	4810	2	1	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0027	4811	2	0	0	0	0	2	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0028	4809	2	2	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0029	4811	2	0	0	2	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0030	4811	2	2	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0031	4810	2	0	1	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0032	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0033	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0034	4812	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0035	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0036	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0037	4811	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0038	4812	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0039	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0040	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0041	4811	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0042	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0043	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0044	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0045	4812	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0046	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0047	4810	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0048	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0049	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0050	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0051	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0052	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0053	4812	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0054	4811	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0055	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0056	4811	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205