JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM184A_chr7_1537235_1561205	0/0	t0057	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0058	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0059	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0060	4811	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0061	4811	1	0	0	0	1	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0062	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0063	4809	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0064	4809	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0065	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0066	4809	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0067	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0068	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0069	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0070	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0071	4811	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0072	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0073	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0074	4810	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0075	4810	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0076	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	1/0	t0077	4810	1	0	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0078	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0079	4810	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0080	4809	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0081	4810	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0082	4810	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0083	4811	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0084	4810	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0085	4809	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	t0086	4810	1	0	0	0	0	1	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184B_chr22_38214291_38278010	0/0	t0001	2364	151	20	25	77	7	22	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0002	2364	72	6	15	39	6	6	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0003	2360	30	13	0	7	0	10	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0004	2364	19	2	8	9	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	1/0	t0005	2364	12	0	3	7	0	1	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0006	2364	10	9	1	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0007	2360	8	7	1	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/1	t0008	2364	7	0	6	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0009	2364	6	6	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0010	2365	4	4	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0011	2364	3	2	1	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0012	2365	2	1	0	1	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0013	2364	2	2	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0014	2364	2	2	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0015	2364	2	2	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0016	2364	1	1	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0017	2364	1	0	1	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0018	2360	1	1	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0019	2360	1	1	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	t0020	2360	1	1	0	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010