Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACSL6_chr5_131944973_132016658	0/0	t0021	4367	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0022	4367	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0023	4365	1	0	0	0	1	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0024	4367	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0025	4367	1	0	1	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0026	4366	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0027	4367	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0028	4365	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0029	4365	1	0	0	0	1	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0030	4365	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0031	4367	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0032	4366	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSM1_chr16_20618235_20702680	1/1	t0001	348	186	45	35	70	12	22	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	t0002	348	126	45	11	53	2	15	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	t0003	348	2	0	0	0	0	2	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	t0004	348	1	0	0	0	0	1	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	t0005	348	1	0	0	1	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	t0006	348	1	0	1	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	t0007	348	1	0	1	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM2A_chr16_20446521_20492669	0/0	t0001	1161	142	28	55	33	7	19	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0002	1161	117	24	9	73	1	10	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/1	t0003	1161	82	0	8	58	5	10	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	1/0	t0004	1161	17	0	4	9	1	2	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0005	1161	15	15	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0006	1161	9	9	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0007	1161	8	6	0	0	0	2	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0008	1161	7	0	0	7	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0009	1161	5	0	0	5	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0010	1161	5	5	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0011	1161	3	3	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0012	1161	2	0	0	1	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0013	1161	2	2	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0014	1161	2	0	0	2	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0015	1161	2	0	0	2	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0016	1161	2	0	0	0	2	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0017	1161	1	0	1	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0018	1161	1	0	1	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0019	1161	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0020	1161	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0021	1161	1	0	0	0	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0022	1161	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0023	1161	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0024	1161	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0025	1161	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0026	1161	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0027	1161	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0028	1161	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0029	1161	1	0	0	0	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0030	1161	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	t0031	1161	1	0	1	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669