Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRWD3_chrX_80664503_80814877	0/0	t0036	7514	2	0	0	1	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0037	7521	2	0	0	2	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0038	7515	2	0	0	2	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0039	7515	2	2	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0040	7509	2	2	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0041	7513	2	0	0	2	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0042	7526	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0043	7510	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0044	7511	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0045	7513	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0046	7520	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0047	7521	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0048	7503	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0049	7535	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0050	7537	1	0	0	0	1	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0051	7534	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0052	7535	1	0	0	0	1	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0053	7531	1	0	0	0	1	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0054	7531	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0055	7533	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0056	7531	1	0	0	0	1	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0057	7527	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0058	7529	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0059	7529	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0060	7531	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0061	7529	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0062	7527	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0063	7523	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0064	7526	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0065	7521	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0066	7522	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0067	7523	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0068	7519	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0069	7519	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0070	7520	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0071	7520	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0072	7523	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0073	7521	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0074	7513	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0075	7522	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0076	7520	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0077	7520	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0078	7518	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0079	7519	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0080	7519	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0081	7524	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0082	7519	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0083	7519	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0084	7517	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0085	7513	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877