Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRWD3_chrX_80664503_80814877	0/0	t0086	7520	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0087	7509	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0088	7508	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0089	7513	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0090	7513	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0091	7506	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0092	7511	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0093	7512	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0094	7507	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0095	7505	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0096	7505	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0097	7505	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0098	7511	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0099	7507	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0100	7509	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0101	7507	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0102	7505	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0103	7509	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0104	7505	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0105	7497	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0106	7499	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0107	7499	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0108	7503	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0109	7499	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0110	7515	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0111	7512	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0112	7536	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0113	7532	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0114	7522	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0115	7520	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0116	7512	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0117	7516	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0118	7512	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0119	7510	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0120	7524	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0121	7539	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0122	7530	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0123	7527	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0124	7512	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0125	7527	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0126	7523	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0127	7523	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0128	7519	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0129	7519	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0130	7516	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0131	7517	1	0	0	0	1	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0132	7517	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0133	7517	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0134	7515	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0135	7516	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877