Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRWD3_chrX_80664503_80814877	0/0	t0136	7512	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0137	7513	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0138	7512	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0139	7514	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0140	7513	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0141	7510	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0142	7512	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0143	7515	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0144	7511	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0145	7513	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0146	7513	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0147	7509	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0148	7511	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0149	7507	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0150	7505	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0151	7503	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0152	7503	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0153	7528	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0154	7526	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0155	7516	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0156	7512	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0157	7511	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0158	7527	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0159	7522	1	0	0	0	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	t0160	7511	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BSCL2_chr11_62685275_62712424	1/1	t0001	322	307	67	55	139	12	32	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	t0002	322	22	19	3	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	t0003	322	1	0	0	1	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSDC1_chr1_32359633_32399441	0/1	t0001	2017	95	34	19	28	4	9	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0002	2017	35	22	6	2	0	5	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0003	2017	10	9	1	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	1/0	t0004	2017	8	2	3	0	2	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0005	2017	5	5	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0006	2017	3	3	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0007	2017	2	2	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0008	2017	2	2	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0009	2017	2	2	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0010	2017	2	0	2	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0011	2017	2	2	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0012	2017	1	1	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0013	2017	1	0	1	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0014	2017	1	0	1	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	t0015	2017	1	0	1	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSG_chr19_567596_588493	0/0	t0001	789	99	20	19	44	2	14	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	1/1	t0002	789	76	4	25	26	11	8	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0003	789	40	25	5	9	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0004	789	36	6	6	13	2	9	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0005	789	17	1	12	2	0	2	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0006	789	8	6	2	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0007	789	8	2	3	0	0	3	copy fasta	BSG	chr19	567596	588493