Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BSG_chr19_567596_588493	0/0	t0008	789	3	0	1	2	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0009	789	2	0	0	2	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0010	789	2	0	0	2	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0011	789	2	2	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0012	789	1	1	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0013	788	1	0	1	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0014	789	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0015	789	1	0	0	0	1	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0016	788	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0017	788	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0018	789	1	0	0	0	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0019	789	1	1	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0020	789	1	1	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0021	789	1	1	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0022	789	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0023	789	1	1	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	t0024	789	1	1	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSND_chr1_54993933_55022172	0/0	t0001	8799	24	0	6	18	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/1	t0002	8803	21	2	5	9	1	3	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0003	8799	11	0	2	7	0	2	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0004	8799	8	0	0	8	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0005	8799	7	0	1	5	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0006	8798	6	0	0	6	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0007	8799	6	0	0	6	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0008	8803	5	5	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0009	8799	5	0	0	5	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0010	8799	5	0	0	4	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0011	8799	4	0	0	4	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0012	8799	4	0	1	2	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0013	8803	4	0	0	0	2	2	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0014	8799	4	0	0	2	1	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0015	8799	4	0	4	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0016	8803	4	0	2	0	0	2	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0017	8803	4	0	0	4	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0018	8803	4	0	0	4	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0019	8803	4	0	1	1	0	2	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0020	8799	3	0	0	3	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0021	8803	3	0	0	1	0	2	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0022	8799	3	0	1	0	1	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0023	8803	3	0	0	1	0	2	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0024	8803	3	0	1	2	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0025	8803	3	3	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0026	8799	3	0	2	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0027	8801	3	3	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0028	8798	3	2	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0029	8810	3	3	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0030	8803	3	0	0	3	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0031	8799	3	0	0	3	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0032	8803	2	2	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0033	8803	2	0	0	2	0	0	copy fasta	BSND	chr1	54993933	55022172