Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BSND_chr1_54993933_55022172	0/0	t0084	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0085	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0086	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0087	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0088	8798	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0089	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0090	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0091	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0092	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0093	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0094	8798	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0095	8802	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0096	8796	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0097	8796	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0098	8802	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0099	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0100	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0101	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0102	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0103	8805	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0104	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0105	8798	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0106	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0107	8799	1	0	0	0	1	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0108	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0109	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0110	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0111	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0112	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0113	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0114	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0115	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0116	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0117	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0118	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0119	8798	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0120	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0121	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0122	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0123	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0124	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0125	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0126	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0127	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0128	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0129	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0130	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0131	8798	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0132	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0133	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172