Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BSND_chr1_54993933_55022172	0/0	t0134	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0135	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0136	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0137	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0138	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0139	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0140	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0141	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0142	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0143	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0144	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0145	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0146	8809	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0147	8802	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0148	8805	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0149	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0150	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0151	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0152	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0153	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0154	8809	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0155	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0156	8810	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0157	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0158	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0159	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0160	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0161	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0162	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0163	8799	1	0	0	0	1	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0164	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0165	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0166	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0167	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0168	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0169	8804	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0170	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0171	8800	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0172	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0173	8803	1	0	0	0	1	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0174	8804	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0175	8804	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0176	8800	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0177	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0178	8800	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0179	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0180	8800	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0181	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0182	8800	1	0	0	0	1	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0183	8800	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172