Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BSND_chr1_54993933_55022172	0/0	t0184	8798	1	0	0	0	1	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0185	8765	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0186	8802	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0187	8802	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0188	8798	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0189	8798	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0190	8799	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0191	8803	1	0	0	0	1	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0192	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0193	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0194	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	1/0	t0195	8799	1	0	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0196	8799	1	0	0	0	1	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0197	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0198	8799	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0199	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0200	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0201	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0202	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0203	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0204	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0205	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0206	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0207	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0208	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0209	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0210	8799	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0211	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0212	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0213	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0214	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0215	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0216	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0217	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0218	8802	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0219	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0220	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0221	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0222	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0223	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0224	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0225	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0226	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0227	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0228	8806	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0229	8805	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0230	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0231	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0232	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0233	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172