Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BSND_chr1_54993933_55022172	0/0	t0234	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0235	8798	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0236	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0237	8798	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0238	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0239	8799	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0240	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0241	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0242	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0243	8803	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0244	8799	1	0	0	0	0	1	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0245	8803	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0246	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0247	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0248	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0249	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0250	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0251	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0252	8799	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0253	8803	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0254	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0255	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0256	8798	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0257	8799	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0258	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0259	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0260	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0261	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0262	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0263	8804	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0264	8792	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0265	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0266	8803	1	1	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0267	8800	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	t0268	8805	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSN_chr3_49549477_49676549	0/0	t0001	4189	46	14	11	7	8	6	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0002	4189	38	8	9	12	2	7	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/1	t0003	4189	25	15	5	1	0	3	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0004	4191	18	13	5	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0005	4189	6	0	5	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0006	4191	6	2	0	0	3	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0007	4189	6	6	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0008	4189	4	0	0	4	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0009	4189	4	0	4	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0010	4191	3	3	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0011	4185	3	0	1	0	1	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0012	4189	3	0	1	0	2	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0013	4189	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0014	4189	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0015	4189	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549