JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMX1_chr14_51235247_51262655	0/0	t0025	3184	1	0	1	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0026	3183	1	1	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0027	3183	1	0	0	0	1	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0028	3183	1	0	1	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0029	3184	1	0	0	0	0	1	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0030	3183	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0031	3184	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX2_chr11_57707593_57745973	0/0	t0001	755	271	74	48	112	8	29	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0002	755	56	7	14	19	6	10	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0003	755	4	4	0	0	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0004	757	3	0	0	3	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0005	755	2	0	0	2	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0006	755	1	0	0	0	0	1	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0007	755	1	0	1	0	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0008	755	1	0	1	0	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0009	755	1	0	0	1	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0010	755	1	1	0	0	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0011	755	1	0	1	0	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0012	755	1	0	0	1	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	t0013	755	1	0	1	0	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX3_chr18_68668688_68720108	1/1	t0001	3373	179	28	38	72	11	28	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0002	3371	27	0	5	21	1	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0003	3373	18	15	3	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0004	3373	15	2	0	12	0	1	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0005	3373	10	0	5	5	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0006	3373	9	9	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0007	3371	7	7	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0008	3372	7	0	0	7	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0009	3372	7	7	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0010	3371	6	0	0	6	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0011	3373	6	0	1	5	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0012	3373	4	4	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0013	3373	4	3	1	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0014	3373	4	4	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0015	3373	3	2	1	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0016	3373	3	0	0	3	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0017	3372	1	1	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0018	3373	1	1	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0019	3373	1	1	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0020	3371	1	0	0	1	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0021	3373	1	0	0	0	0	1	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0022	3373	1	0	0	1	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0023	3373	1	0	0	1	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0024	3373	1	1	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	t0025	3373	1	1	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX4_chr20_7972346_8024761	0/1	t0001	5054	89	20	15	37	1	15	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0002	5055	70	1	6	57	0	6	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0003	5055	22	21	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0004	5054	21	1	6	8	1	5	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0005	5054	15	0	4	11	0	0	copy fasta	TMX4	chr20	7972346	8024761