JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMX4_chr20_7972346_8024761	0/0	t0006	5052	14	0	2	12	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0007	5054	10	9	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0008	5054	8	1	3	0	0	4	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0009	5054	8	5	1	0	0	2	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0010	5054	6	0	4	0	1	1	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0011	5054	5	4	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0012	5055	4	4	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0013	5053	4	4	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0014	5054	4	0	0	4	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	1/0	t0015	5054	4	0	1	1	1	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0016	5054	3	0	0	3	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0017	5056	3	0	0	3	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0018	5054	3	2	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0019	5053	2	2	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0020	5055	2	2	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0021	5055	2	2	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0022	5054	2	2	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0023	5051	2	0	1	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0024	5054	2	0	0	2	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0025	5055	2	0	0	2	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0026	5054	2	0	2	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0027	5053	2	0	1	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0028	5054	2	0	0	0	0	2	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0029	5054	2	0	0	0	1	1	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0030	5054	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0031	5052	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0032	5054	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0033	5055	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0034	5054	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0035	5054	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0036	5054	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0037	5052	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0038	5051	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0039	5053	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0040	5055	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0041	5054	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0042	5054	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0043	5054	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0044	5054	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0045	5055	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0046	5054	1	0	0	0	1	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0047	5054	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0048	5053	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0049	5054	1	0	0	0	0	1	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0050	5054	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0051	5054	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0052	5054	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0053	5055	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0054	5051	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0055	5054	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761