JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMX4_chr20_7972346_8024761	0/0	t0056	5054	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0057	5055	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0058	5054	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0059	5054	1	0	0	0	0	1	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	t0060	5054	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TNC_chr9_115014575_115123157	0/0	t0001	1897	115	20	25	45	9	16	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	1/0	t0002	1895	88	14	17	33	2	21	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0003	1897	25	1	0	24	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0004	1895	25	22	1	1	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0005	1896	22	7	8	7	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/1	t0006	1896	17	10	6	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0007	1895	13	0	0	12	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0008	1897	11	0	1	6	0	4	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0009	1896	6	0	0	6	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0010	1896	6	0	2	2	2	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0011	1894	5	0	4	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0012	1897	5	4	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0013	1898	4	1	0	3	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0014	1897	4	4	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0015	1898	3	3	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0016	1896	2	0	0	1	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0017	1894	2	0	0	2	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0018	1897	2	0	1	0	1	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0019	1896	2	0	2	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0020	1895	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0021	1896	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0022	1896	1	0	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0023	1897	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0024	1896	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0025	1895	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0026	1897	1	0	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0027	1895	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	t0028	1896	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNFAIP1_chr17_28330761_28352009	0/1	t0001	2622	232	56	53	73	10	39	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0002	2622	75	9	8	51	1	6	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0003	2622	11	11	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0004	2622	4	3	1	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0005	2622	3	3	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0006	2622	3	3	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0007	2622	2	0	0	0	1	1	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0008	2622	2	1	1	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0009	2622	2	2	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	1/0	t0010	2620	1	0	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0011	2622	1	1	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0012	2622	1	0	1	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0013	2622	1	1	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0014	2622	1	0	1	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	t0015	2622	1	0	1	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP2_chr14_103118461_103142439	0/0	t0001	2718	176	12	26	99	10	29	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	1/1	t0002	2719	69	1	11	49	2	4	copy fasta	TNFAIP2	chr14	103118461	103142439