JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFAIP2_chr14_103118461_103142439	0/0	t0053	2718	1	1	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	t0054	2718	1	1	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP3_chr6_137862259_137888312	1/1	t0001	2293	317	64	63	140	13	35	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0002	2269	13	9	3	0	0	1	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0003	2293	5	5	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0004	2293	3	3	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0005	2293	3	0	0	3	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0006	2293	2	2	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0007	2293	2	2	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0008	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0009	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0010	2258	1	0	0	0	1	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0011	2293	1	0	0	1	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0012	2293	1	0	0	0	0	1	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0013	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0014	2293	1	0	0	1	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0015	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0016	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0017	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0018	2293	1	0	0	1	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0019	2293	1	0	0	0	0	1	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0020	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0021	2269	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	t0022	2293	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP6_chr2_151352592_151385046	1/0	t0001	589	333	53	62	165	16	36	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/1	t0002	589	53	21	6	16	2	7	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	t0003	589	23	5	0	15	0	3	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	t0004	589	4	4	0	0	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	t0005	589	3	3	0	0	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP8L1_chr19_4634516_4660568	1/0	t0001	3256	64	0	13	45	2	3	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/1	t0002	3255	56	3	20	21	5	6	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0003	3256	38	1	2	31	2	2	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0004	3251	22	1	0	21	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0005	3255	21	13	2	3	1	2	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0006	3253	18	9	2	6	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0007	3254	17	1	8	3	1	4	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0008	3254	16	15	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0009	3256	14	1	5	5	0	3	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0010	3257	11	0	0	9	0	2	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0011	3258	11	0	5	0	2	4	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0012	3257	9	0	1	5	0	3	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0013	3251	8	1	0	7	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0014	3250	6	6	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0015	3252	6	6	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0016	3251	6	2	2	0	2	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0017	3255	5	0	0	5	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0018	3250	5	5	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0019	3255	5	0	0	2	0	3	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0020	3254	3	0	1	0	0	2	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0021	3257	3	0	3	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568