JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TNFAIP8L1_chr19_4634516_4660568	0/0	t0022	3255	3	3	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0023	3250	3	3	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0024	3250	2	2	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0025	3256	2	0	2	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0026	3255	2	0	0	2	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0027	3255	2	0	1	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0028	3255	2	1	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0029	3256	2	0	0	2	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0030	3255	2	0	2	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0031	3254	2	1	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0032	3253	2	2	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0033	3252	2	0	0	2	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0034	3255	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0035	3254	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0036	3256	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0037	3255	1	0	0	0	1	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0038	3252	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0039	3254	1	0	0	0	1	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0040	3256	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0041	3257	1	0	0	0	1	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0042	3251	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0043	3255	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0044	3251	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0045	3257	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0046	3256	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0047	3256	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0048	3256	1	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0049	3255	1	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0050	3257	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0051	3256	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0052	3255	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0053	3255	1	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0054	3251	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0055	3189	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0056	3255	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0057	3254	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0058	3256	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0059	3254	1	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0060	3257	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0061	3251	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0062	3256	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0063	3256	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0064	3251	1	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0065	3256	1	0	0	1	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0066	3254	1	0	0	0	1	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0067	3253	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0068	3253	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0069	3251	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0070	3251	1	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0071	3253	1	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568