JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFAIP8L1_chr19_4634516_4660568	0/0	t0072	3251	1	1	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0073	3252	1	0	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0074	3254	1	0	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0075	3253	1	1	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0076	3244	1	1	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0077	3257	1	0	1	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0078	3255	1	0	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	t0079	3251	1	1	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L2_chr1_151151649_151164749	1/1	t0001	604	347	95	64	132	18	36	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	t0002	604	1	1	0	0	0	0	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L3_chr15_51051601_51099906	0/1	t0001	1593	151	43	35	41	9	22	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0002	1593	114	16	22	64	1	11	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0003	1584	94	2	11	68	4	9	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0004	1600	11	9	2	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0005	1593	7	6	1	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0006	1593	4	4	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0007	1593	2	2	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0008	1593	2	2	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0009	1593	2	0	0	2	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0010	1593	1	0	0	1	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0011	1600	1	1	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0012	1593	1	1	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	1/0	t0013	1592	1	0	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0014	1593	1	1	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0015	1584	1	0	1	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	t0016	1584	1	1	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8_chr5_119351019_119404688	1/1	t0001	6380	62	1	7	45	3	4	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0002	6380	56	0	0	55	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0003	6377	45	8	13	13	2	9	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0004	6379	18	2	6	9	1	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0005	6377	13	1	7	0	3	2	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0006	6379	11	1	5	5	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0007	6412	5	5	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0008	6380	5	1	2	2	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0009	6378	5	4	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0010	6379	4	2	2	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0011	6381	4	0	0	2	0	2	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0012	6380	4	0	0	4	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0013	6381	4	0	0	4	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0014	6380	4	0	4	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0015	6411	4	4	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0016	6380	4	0	4	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0017	6377	3	3	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0018	6404	3	1	0	1	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0019	6409	3	3	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0020	6411	3	3	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0021	6376	3	0	1	0	0	2	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0022	6381	3	0	0	3	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0023	6380	3	0	0	3	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0024	6380	3	0	2	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688