JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFAIP8_chr5_119351019_119404688	0/0	t0025	6378	2	2	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0026	6400	2	0	2	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0027	6377	2	1	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0028	6383	2	0	2	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0029	6382	2	2	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0030	6381	2	2	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0031	6395	2	1	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0032	6381	2	1	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0033	6405	2	1	0	0	1	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0034	6407	2	0	2	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0035	6411	2	2	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0036	6407	2	2	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0037	6381	2	0	0	2	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0038	6377	2	2	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0039	6376	2	1	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0040	6381	2	0	0	2	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0041	6399	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0042	6383	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0043	6377	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0044	6377	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0045	6377	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0046	6376	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0047	6380	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0048	6397	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0049	6396	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0050	6406	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0051	6378	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0052	6406	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0053	6393	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0054	6406	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0055	6405	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0056	6407	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0057	6410	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0058	6411	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0059	6412	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0060	6414	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0061	6413	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0062	6412	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0063	6406	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0064	6408	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0065	6413	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0066	6380	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0067	6378	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0068	6377	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0069	6376	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0070	6377	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0071	6378	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0072	6383	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0073	6380	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0074	6380	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688