Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BSN_chr3_49549477_49676549	0/0	t0016	4191	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0017	4189	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0018	4189	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0019	4191	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0020	4189	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0021	4189	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	1/0	t0022	4191	1	0	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0023	4191	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0024	4189	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0025	4191	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0026	4189	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0027	4189	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0028	4189	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0029	4191	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0030	4187	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0031	4179	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0032	4189	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0033	4189	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	t0034	4189	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSPH1_chr19_47963046_47997170	1/0	t0001	256	299	76	40	153	8	21	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/1	t0002	256	133	8	40	51	8	25	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	t0003	256	10	10	0	0	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	t0004	256	1	0	0	1	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	t0005	256	1	0	0	1	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPRY_chr9_113344541_113376222	0/0	t0001	1120	84	29	12	39	1	3	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	1/0	t0002	1120	76	24	13	24	2	12	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0003	1120	61	1	5	52	0	3	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/1	t0004	1119	46	8	19	9	2	7	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0005	1121	39	2	7	28	2	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0006	1119	30	4	6	12	1	7	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0007	1120	20	0	1	15	1	3	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0008	1121	16	2	3	4	3	4	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0009	1119	16	11	3	0	2	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0010	1119	12	0	2	4	3	3	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0011	1120	10	0	1	9	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0012	1120	4	0	4	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0013	1118	4	0	1	3	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0014	1120	3	3	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0015	1120	3	0	0	3	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0016	1119	3	1	0	2	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0017	1120	2	2	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0018	1121	2	0	2	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0019	1121	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0020	1121	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0021	1121	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0022	1121	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0023	1120	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0024	1120	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0025	1120	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0026	1120	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222