JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFAIP8_chr5_119351019_119404688	0/0	t0075	6382	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0076	6379	1	0	0	0	1	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0077	6374	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0078	6380	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0079	6381	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0080	6380	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0081	6380	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0082	6379	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0083	6378	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0084	6378	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0085	6377	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0086	6382	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0087	6381	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0088	6378	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0089	6724	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0090	6382	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0091	6380	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0092	6381	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0093	6377	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0094	6377	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0095	6383	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0096	6407	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0097	6418	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0098	6378	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0099	6379	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0100	6381	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0101	6380	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0102	6381	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0103	6378	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0104	6375	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0105	6380	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0106	6379	1	0	0	0	1	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0107	6380	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0108	6381	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0109	6379	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0110	6366	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0111	6375	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0112	6379	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0113	6378	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0114	6377	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0115	6379	1	1	0	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0116	6383	1	0	0	1	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0117	6376	1	0	1	0	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0118	6380	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0119	6381	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	t0120	6379	1	0	0	0	0	1	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFRSF10A_chr8_23185452_23230102	1/1	t0001	1284	279	75	51	114	11	26	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0002	1285	46	2	16	9	5	14	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0003	1284	12	1	1	10	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0004	1283	9	8	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102