JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF10A_chr8_23185452_23230102	0/0	t0005	1284	3	3	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0006	1284	2	2	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0007	1284	2	2	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0008	1284	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0009	1284	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0010	1284	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0011	1284	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	t0012	1284	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10B_chr8_23015133_23074031	1/0	t0001	2676	161	38	22	73	3	24	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/1	t0002	2676	81	6	9	53	3	9	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0003	2676	42	8	10	21	1	2	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0004	2676	33	19	5	6	2	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0005	2676	19	1	7	7	3	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0006	2676	11	2	4	1	2	2	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0007	2676	5	0	0	4	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0008	2671	3	3	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0009	2676	2	2	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0010	2676	2	2	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0011	2676	2	1	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0012	2676	2	2	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0013	2676	2	0	1	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0014	2676	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0015	2676	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0016	2676	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0017	2676	1	0	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0018	2676	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0019	2653	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0020	2676	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0021	2676	1	0	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0022	2676	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0023	2720	1	0	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0024	2676	1	0	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0025	2676	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0026	2676	1	0	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0027	2676	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0028	2676	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0029	2676	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0030	2676	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0031	2676	1	0	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	t0032	2671	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10C_chr8_23097921_23122445	1/1	t0001	616	406	95	59	193	15	42	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	t0002	616	39	0	13	24	0	2	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	t0003	616	3	3	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	t0004	616	2	0	0	0	0	2	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	t0005	616	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	t0006	616	1	0	0	1	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	t0007	616	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	t0008	616	1	0	0	0	1	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10D_chr8_23130588_23169027	0/0	t0001	2375	135	52	24	44	5	10	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	t0002	2375	95	3	15	62	3	12	copy fasta	TNFRSF10D	chr8	23130588	23169027