JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF13C_chr22_41917032_41931806	0/0	t0068	3367	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0069	3368	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0070	3368	1	0	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0071	3370	1	0	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0072	3368	1	0	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0073	3369	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0074	3369	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0075	3369	1	0	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0076	3369	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0077	3369	1	0	0	0	0	1	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0078	3370	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0079	3371	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0080	3369	1	0	0	0	0	1	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0081	3371	1	0	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0082	3371	1	0	0	0	0	1	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	t0083	3392	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF14_chr1_2551371_2568829	0/0	t0001	851	202	57	42	78	4	21	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/1	t0002	851	164	17	33	84	8	21	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0003	851	8	7	1	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0004	851	6	6	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0005	851	2	0	0	2	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0006	851	2	0	0	0	0	2	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0007	851	2	0	0	0	0	2	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0008	851	2	2	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0009	851	2	2	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0010	851	2	2	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0011	851	1	0	0	1	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0012	851	1	0	0	1	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	t0013	851	1	1	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF17_chr16_11960210_11973068	1/1	t0001	337	242	59	62	90	11	18	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	t0002	338	172	33	22	86	5	26	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	t0003	337	2	2	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	t0004	337	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	t0005	337	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF18_chr1_1198508_1211592	1/1	t0001	358	279	42	57	123	15	40	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0002	358	94	50	6	31	3	4	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0003	358	5	4	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0004	358	2	0	2	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0005	358	2	2	0	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0006	358	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0007	358	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0008	358	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	t0009	358	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF19_chr13_23565412_23681093	0/1	t0001	3185	163	26	39	73	7	17	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	1/0	t0002	3185	49	6	4	31	1	6	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0003	3185	33	3	10	12	3	5	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0004	3185	30	0	0	30	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0005	3184	19	0	2	16	0	1	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0006	3185	10	8	2	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0007	3185	8	5	2	0	1	0	copy fasta	TNFRSF19	chr13	23565412	23681093