JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF19_chr13_23565412_23681093	0/0	t0008	3185	7	0	0	7	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0009	3184	6	0	2	4	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0010	3185	6	6	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0011	3185	5	5	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0012	3185	5	3	2	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0013	3185	3	3	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0014	3185	3	3	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0015	3185	3	3	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0016	3185	3	3	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0017	3185	3	0	0	3	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0018	3189	3	3	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0019	3185	2	0	0	2	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0020	3154	2	2	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0021	3185	2	2	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0022	3185	2	0	0	2	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0023	3184	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0024	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0025	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0026	3185	1	0	1	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0027	3185	1	0	1	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0028	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0029	3185	1	0	0	0	0	1	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0030	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0031	3185	1	0	1	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0032	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0033	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0034	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0035	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0036	3185	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0037	3185	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0038	3185	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0039	3185	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0040	3185	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0041	3185	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0042	3189	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	t0043	3189	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF1A_chr12_6323771_6347076	1/1	t0001	804	390	68	75	186	18	41	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0002	804	22	22	0	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0003	805	6	2	2	1	0	1	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0004	804	4	0	0	4	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0005	794	3	1	2	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0006	804	2	0	0	2	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0007	804	2	2	0	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0008	804	2	0	0	2	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0009	804	1	1	0	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0010	804	1	0	0	1	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	t0011	804	1	0	1	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1B_chr1_12161991_12214220	0/0	t0001	2302	55	3	17	21	4	10	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0002	2302	53	6	9	31	1	6	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	1/0	t0003	2302	47	9	7	23	3	4	copy fasta	TNFRSF1B	chr1	12161991	12214220