JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF1B_chr1_12161991_12214220	0/0	t0004	2302	17	2	2	12	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0005	2303	17	2	0	13	1	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0006	2303	12	10	2	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0007	2302	12	0	0	11	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0008	2302	9	8	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0009	2303	9	1	4	1	2	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0010	2302	8	6	0	2	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0011	2303	7	7	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0012	2302	7	2	1	3	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0013	2302	6	1	1	0	0	4	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0014	2302	6	0	4	0	1	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0015	2303	5	4	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/1	t0016	2306	5	0	4	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0017	2302	4	4	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0018	2303	4	3	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0019	2302	4	0	0	4	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0020	2303	3	0	2	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0021	2303	3	3	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0022	2302	3	0	1	1	1	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0023	2303	3	3	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0024	2302	3	0	0	2	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0025	2303	3	2	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0026	2303	2	1	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0027	2302	2	0	2	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0028	2302	2	0	2	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0029	2303	2	0	0	1	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0030	2302	2	0	0	2	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0031	2303	2	0	2	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0032	2303	2	1	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0033	2302	2	0	0	0	0	2	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0034	2303	2	0	0	1	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0035	2302	2	2	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0036	2306	2	0	2	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0037	2302	2	0	0	0	0	2	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0038	2311	2	2	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0039	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0040	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0041	2303	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0042	2302	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0043	2302	1	0	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0044	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0045	2303	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0046	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0047	2302	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0048	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0049	2303	1	0	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0050	2302	1	0	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0051	2302	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0052	2302	1	0	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0053	2306	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220