Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BSPRY_chr9_113344541_113376222	0/0	t0027	1120	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0028	1120	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0029	1118	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0030	1119	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0031	1119	1	0	1	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0032	1119	1	0	1	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0033	1121	1	0	0	0	1	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0034	1119	1	0	1	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	t0035	1119	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BST1_chr4_15698065_15737787	1/1	t0001	1023	362	90	62	152	12	44	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0002	1023	65	3	4	56	0	2	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0003	1023	3	0	1	0	2	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0004	1023	2	2	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0005	1023	2	0	2	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0006	1023	2	1	1	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0007	1023	2	0	0	2	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0008	1023	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0009	1023	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0010	1023	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	t0011	1023	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST2_chr19_17397939_17410630	0/1	t0001	467	178	22	54	68	12	21	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0002	467	107	28	15	51	1	12	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	1/0	t0003	459	67	10	3	50	2	1	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0004	467	27	15	1	2	0	9	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0005	468	8	7	0	0	0	1	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0006	467	7	4	1	1	1	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0007	468	5	0	0	3	0	2	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0008	468	2	0	1	1	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0009	467	2	0	0	0	0	2	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0010	460	2	0	0	2	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0011	459	2	2	0	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0012	467	1	0	0	1	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0013	468	1	1	0	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0014	467	1	1	0	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0015	467	1	0	0	1	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	t0016	459	1	0	1	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BSX_chr11_122972570_122986834	1/1	t0001	243	414	100	68	183	16	45	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	t0002	243	3	0	0	0	0	3	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	t0003	243	2	0	0	2	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	t0004	243	2	0	0	2	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	t0005	243	1	0	0	1	0	0	copy fasta	BSX	chr11	122972570	122986834
BTAF1_chr10_91918770_92036437	1/0	t0001	2812	155	64	28	39	3	20	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0002	2812	90	6	19	50	4	11	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0003	2816	60	3	13	33	5	6	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0004	2814	8	7	1	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0005	2812	4	4	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0006	2815	3	0	0	3	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0007	2814	3	3	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0008	2812	2	0	0	2	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0009	2812	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437