JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF1B_chr1_12161991_12214220	0/0	t0054	2303	1	0	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0055	2303	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0056	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0057	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0058	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0059	2302	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0060	2303	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0061	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0062	2303	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0063	2302	1	0	0	0	1	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0064	2306	1	0	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0065	2302	1	0	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0066	2302	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0067	2311	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0068	2311	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	t0069	2311	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF21_chr6_47226532_47314905	0/1	t0001	1626	88	6	30	32	9	10	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0002	1626	88	16	8	55	2	7	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	1/0	t0003	1628	38	6	6	15	0	10	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0004	1628	29	14	1	12	0	2	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0005	1621	12	9	2	0	1	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0006	1642	10	0	3	6	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0007	1621	8	4	3	0	1	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0008	1642	6	1	2	1	0	2	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0009	1640	5	1	0	4	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0010	1634	4	4	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0011	1634	3	3	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0012	1610	3	3	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0013	1638	3	2	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0014	1626	3	2	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0015	1626	3	0	0	3	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0016	1624	3	0	0	2	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0017	1622	3	3	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0018	1644	2	0	0	0	1	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0019	1630	2	2	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0020	1624	2	0	0	1	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0021	1636	2	2	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0022	1630	1	0	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0023	1610	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0024	1640	1	0	0	0	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0025	1636	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0026	1634	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0027	1632	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0028	1630	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0029	1630	1	0	0	0	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0030	1628	1	0	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0031	1628	1	0	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0032	1628	1	0	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0033	1628	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0034	1624	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905