JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF8_chr1_12058303_12149207	0/0	t0011	1973	2	0	0	2	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0012	1973	2	1	1	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0013	1973	2	0	2	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0014	1973	1	0	0	0	1	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0015	1975	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0016	1973	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0017	1973	1	0	0	0	1	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0018	1973	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0019	1973	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0020	1973	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0021	1973	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/1	t0022	1973	1	0	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0023	1973	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0024	1975	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0025	1973	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0026	1973	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF9_chr1_7910871_7945839	1/0	t0001	5105	80	10	22	35	5	7	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0002	5102	53	0	14	38	0	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0003	5106	46	14	8	14	7	3	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0004	5106	17	0	1	14	0	2	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0005	5108	15	0	0	13	1	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0006	5105	15	0	0	14	0	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0007	5107	11	0	6	1	0	4	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0008	5110	10	10	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0009	5105	9	0	0	9	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0010	5099	7	7	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0011	5112	6	6	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0012	5109	6	0	2	0	2	2	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0013	5102	5	0	5	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0014	5110	4	3	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0015	5122	4	4	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0016	5104	4	3	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0017	5111	3	3	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0018	5103	3	0	0	3	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0019	5095	3	2	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0020	5103	3	2	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0021	5102	3	0	1	2	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0022	5104	3	0	0	3	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0023	5107	3	0	1	1	0	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0024	5088	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0025	5108	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0026	5122	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0027	5107	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0028	5107	2	1	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0029	5108	2	0	0	2	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0030	5110	2	1	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0031	5108	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0032	5109	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0033	5107	2	0	0	2	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0034	5105	2	0	0	0	0	2	copy fasta	TNFRSF9	chr1	7910871	7945839