JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF9_chr1_7910871_7945839	0/0	t0035	5109	2	0	0	2	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0036	5105	2	0	0	2	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0037	5105	2	0	1	0	1	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0038	5105	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0039	5105	2	0	0	0	2	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0040	5106	2	0	0	0	0	2	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0041	5110	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0042	5105	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0043	5102	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0044	5112	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0045	5110	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0046	5111	1	0	0	0	0	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0047	5110	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0048	5106	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0049	5112	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0050	5106	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0051	5110	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0052	5107	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0053	5105	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0054	5111	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0055	5105	1	0	0	0	0	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0056	5105	1	0	0	0	0	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0057	5107	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0058	5105	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0059	5105	1	0	0	0	0	1	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0060	5105	1	0	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0061	5105	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/1	t0062	5109	1	0	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0063	5105	1	0	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0064	5102	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0065	5102	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0066	5104	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0067	5104	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0068	5102	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0069	5102	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0070	5102	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0071	5106	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0072	5102	1	0	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0073	5103	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0074	5105	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0075	5110	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0076	5107	1	1	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	t0077	5109	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFSF10_chr3_172500508_172528430	0/0	t0001	1030	185	43	34	84	10	14	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	1/1	t0002	1031	133	14	25	74	4	14	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0003	1028	50	2	11	28	2	7	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0004	1031	13	10	2	0	0	1	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0005	1029	11	9	0	1	0	1	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0006	1031	7	7	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0007	1032	6	5	0	1	0	0	copy fasta	TNFSF10	chr3	172500508	172528430