JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFSF10_chr3_172500508_172528430	0/0	t0008	1030	6	0	1	4	0	1	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0009	1032	5	5	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0010	1028	5	0	2	0	1	2	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0011	1032	4	0	0	3	0	1	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0012	1031	3	0	0	3	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0013	1029	2	1	1	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0014	1028	2	0	2	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0015	1030	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0016	1031	1	0	0	0	1	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0017	1030	1	0	0	1	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0018	1028	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0019	1028	1	0	0	0	0	1	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	t0020	1028	1	0	0	1	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF11_chr13_42569152_42613013	0/1	t0001	1248	233	49	40	121	4	18	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0002	1248	125	13	30	62	8	12	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0003	1248	21	6	1	12	0	2	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0004	1248	8	7	1	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0005	1248	5	0	0	5	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	1/0	t0006	1248	4	3	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0007	1248	4	4	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0008	1248	2	0	0	2	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0009	1248	2	2	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0010	1248	2	0	2	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0011	1248	1	1	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0012	1248	1	0	0	1	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0013	1248	1	1	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	t0014	1248	1	0	0	1	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF12_chr17_7544058_7562881	1/1	t0001	628	205	38	46	100	7	12	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0002	628	108	4	20	58	4	22	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0003	628	52	22	3	16	3	8	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0004	628	28	1	3	18	2	4	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0005	628	21	21	0	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0006	628	9	7	2	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0007	628	8	0	8	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0008	628	1	1	0	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0009	628	1	0	0	0	0	1	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0010	628	1	1	0	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0011	628	1	0	0	0	0	1	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	t0012	628	1	1	0	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF13B_chr13_108264718_108313478	0/0	t0001	1715	54	26	16	2	4	6	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	1/1	t0002	1719	48	10	10	12	6	8	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0003	1706	45	0	6	35	1	3	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0004	1716	44	0	1	41	0	2	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0005	1717	38	1	10	24	2	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0006	1714	37	27	8	1	1	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0007	1716	29	2	5	21	0	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0008	1720	22	2	5	7	1	7	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0009	1718	11	2	2	7	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0010	1718	7	0	2	2	1	2	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0011	1718	6	0	5	0	1	0	copy fasta	TNFSF13B	chr13	108264718	108313478