JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFSF13B_chr13_108264718_108313478	0/0	t0012	1716	5	3	1	0	0	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0013	1708	5	5	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0014	1715	4	0	0	3	0	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0015	1717	3	1	0	2	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0016	1717	2	2	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0017	1719	2	0	2	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0018	1719	2	0	2	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0019	1714	2	2	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0020	1710	2	2	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0021	1712	2	2	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0022	1720	1	0	0	1	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0023	1719	1	0	0	0	0	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0024	1719	1	1	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0025	1717	1	0	0	1	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0026	1717	1	0	1	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0027	1717	1	0	0	0	0	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0028	1717	1	1	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0029	1717	1	0	1	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0030	1716	1	0	0	0	0	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0031	1715	1	1	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0032	1715	1	0	1	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0033	1714	1	0	0	0	1	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0034	1707	1	0	0	0	0	1	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	t0035	1716	1	0	0	1	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13_chr17_7553750_7566601	1/1	t0001	1059	371	67	68	182	14	38	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0002	1059	41	7	8	16	2	8	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0003	1059	17	16	1	0	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0004	1059	4	3	1	0	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0005	1059	2	2	0	0	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0006	1059	2	2	0	0	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0007	1059	1	0	1	0	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0008	1059	1	0	1	0	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	t0009	1059	1	1	0	0	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF14_chr19_6656253_6675160	0/1	t0001	3762	98	0	10	72	4	11	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0002	3765	88	20	30	20	5	13	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0003	3765	77	2	11	62	0	2	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0004	3765	23	0	5	18	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0005	3765	20	19	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0006	3762	17	5	8	4	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0007	3765	13	4	0	4	2	3	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0008	3762	10	0	0	10	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0009	3765	8	0	3	2	1	2	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0010	3765	6	6	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0011	3765	6	0	0	3	0	3	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0012	3762	6	0	0	3	0	3	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0013	3762	5	4	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0014	3765	4	0	2	0	1	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0015	3765	4	4	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0016	3765	4	2	2	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0017	3765	3	2	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160