JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFSF14_chr19_6656253_6675160	0/0	t0018	3766	3	3	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0019	3765	3	3	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0020	3762	3	0	0	3	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0021	3765	3	3	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0022	3765	2	0	0	0	0	2	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	1/0	t0023	3765	2	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0024	3765	2	0	0	0	2	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0025	3765	2	2	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0026	3765	2	0	0	1	1	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0027	3765	2	0	0	0	1	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0028	3765	2	0	0	2	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0029	3765	2	2	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0030	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0031	3765	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0032	3762	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0033	3765	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0034	3765	1	0	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0035	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0036	3765	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0037	3778	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0038	3765	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0039	3762	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0040	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0041	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0042	3789	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0043	3765	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0044	3765	1	0	0	0	1	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0045	3765	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0046	3765	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0047	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0048	3765	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0049	3762	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0050	3762	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0051	3762	1	0	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0052	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0053	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0054	3798	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0055	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0056	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0057	3765	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0058	3762	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0059	3762	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0060	3762	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0061	3747	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0062	3762	1	0	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0063	3762	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0064	3762	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0065	3762	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0066	3759	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0067	3765	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160