JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFSF14_chr19_6656253_6675160	0/0	t0068	3765	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0069	3765	1	0	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0070	3766	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0071	3762	1	0	0	0	0	1	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0072	3765	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0073	3762	1	0	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0074	3762	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	t0075	3765	1	0	1	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF15_chr9_114779652_114811039	0/1	t0001	5829	106	11	21	58	5	10	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	1/0	t0002	5828	83	2	17	54	3	6	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0003	5832	30	0	0	16	1	13	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0004	5827	26	8	10	1	3	4	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0005	5827	25	2	3	18	0	2	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0006	5829	21	16	3	0	0	2	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0007	5828	12	12	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0008	5829	12	3	8	0	0	1	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0009	5828	10	2	1	6	0	1	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0010	5829	10	3	0	6	0	1	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0011	5828	8	7	1	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0012	5833	7	1	0	5	0	1	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0013	5832	5	0	5	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0014	5828	4	1	2	0	1	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0015	5826	4	0	0	4	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0016	5825	3	0	0	3	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0017	5832	3	0	3	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0018	5829	3	3	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0019	5828	3	3	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0020	5826	3	3	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0021	5828	2	0	0	2	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0022	5829	2	2	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0023	5829	2	0	0	0	1	1	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0024	5829	2	2	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0025	5827	2	2	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0026	5828	2	2	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0027	5827	2	0	0	2	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0028	5828	1	0	0	1	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0029	5829	1	0	0	1	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0030	5829	1	0	0	1	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0031	5829	1	0	0	0	0	1	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0032	5829	1	1	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0033	5829	1	0	0	1	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0034	5829	1	0	0	1	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0035	5828	1	0	1	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0036	5827	1	0	0	1	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0037	5827	1	0	1	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0038	5828	1	0	0	0	0	1	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0039	5828	1	0	0	1	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0040	5828	1	1	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0041	5829	1	1	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0042	5827	1	1	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039