JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFSF15_chr9_114779652_114811039	0/0	t0043	5827	1	0	1	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0044	5828	1	0	1	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	t0045	5828	1	1	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF18_chr1_173034202_173055941	1/0	t0001	2211	153	50	35	42	12	13	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/1	t0002	2212	102	2	25	55	3	16	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0003	2212	15	0	2	13	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0004	2214	10	2	0	8	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0005	2214	9	0	4	2	0	3	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0006	2211	7	7	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0007	2213	5	0	4	0	1	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0008	2210	4	0	0	4	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0009	2214	4	4	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0010	2214	3	3	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0011	2209	3	2	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0012	2211	3	3	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0013	2217	2	2	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0014	2212	2	2	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0015	2211	2	1	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0016	2210	2	0	2	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0017	2211	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0018	2211	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0019	2212	1	0	0	1	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0020	2210	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0021	2216	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0022	2211	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0023	2211	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0024	2210	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0025	2212	1	0	0	0	0	1	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0026	2212	1	0	0	0	0	1	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0027	2210	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0028	2211	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0029	2201	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0030	2211	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0031	2211	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0032	2212	1	0	0	0	0	1	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0033	2212	1	0	0	0	0	1	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0034	2211	1	0	0	1	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0035	2213	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	t0036	2211	1	1	0	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF4_chr1_173178731_173212331	1/1	t0001	2941	146	16	35	63	12	18	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0002	2939	30	9	4	16	0	1	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0003	2939	21	3	8	3	3	4	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0004	2939	19	18	1	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0005	2940	12	12	0	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0006	2941	10	6	3	0	1	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0007	2941	7	5	2	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0008	2941	6	6	0	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0009	2939	5	0	5	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0010	2941	5	3	2	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0011	2939	5	4	1	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331