JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFSF4_chr1_173178731_173212331	0/0	t0012	2941	4	0	0	4	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0013	2940	3	0	0	3	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0014	2940	2	0	0	0	0	2	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0015	2939	2	2	0	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0016	2941	2	0	0	2	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0017	2941	1	0	0	1	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0018	2940	1	1	0	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0019	2939	1	0	1	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0020	2939	1	0	0	1	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0021	2941	1	0	0	0	0	1	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0022	2941	1	1	0	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0023	2942	1	0	1	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0024	2941	1	0	0	1	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	t0025	2941	1	0	1	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF8_chr9_114896145_114935591	1/0	t0001	3075	141	17	19	72	7	25	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/1	t0002	3075	104	13	31	40	4	15	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0003	3075	53	42	9	0	0	2	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0004	3075	34	0	8	26	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0005	3075	12	11	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0006	3075	9	0	0	9	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0007	3075	8	0	0	8	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0008	3073	5	0	1	3	1	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0009	3075	5	0	0	5	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0010	3075	5	0	0	5	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0011	3073	4	0	4	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0012	3073	2	0	0	2	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0013	3075	2	2	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0014	3075	1	0	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0015	3075	1	1	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0016	3075	1	0	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0017	3075	1	1	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0018	3075	1	0	0	0	0	1	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0019	3075	1	0	0	0	0	1	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0020	3075	1	0	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0021	3075	1	1	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0022	3075	1	1	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0023	3075	1	1	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0024	3075	1	1	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0025	3075	1	0	0	1	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0026	3075	1	1	0	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0027	3075	1	0	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0028	3075	1	0	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0029	3075	1	0	0	1	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0030	3075	1	0	0	1	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0031	3075	1	0	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0032	3075	1	0	1	0	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	t0033	3075	1	0	0	1	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF9_chr19_6526026_6540924	0/0	t0001	867	145	11	40	68	10	16	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/1	t0002	868	27	3	12	0	4	7	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0003	871	21	0	1	17	0	3	copy fasta	TNFSF9	chr19	6526026	6540924