Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTAF1_chr10_91918770_92036437	0/0	t0010	2816	1	0	0	0	0	1	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0011	2812	1	0	1	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/1	t0012	2812	1	0	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	t0013	2812	1	1	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTBD10_chr11_13383008_13468222	1/1	t0001	1012	244	71	32	104	7	28	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	t0002	1012	73	8	20	37	3	5	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	t0003	1012	33	10	6	13	2	2	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	t0004	1012	2	0	0	2	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	t0005	1012	2	2	0	0	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	t0006	1012	1	1	0	0	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	t0007	1012	1	0	0	0	0	1	copy fasta	BTBD10	chr11	13383008	13468222
BTBD16_chr10_122266296_122343159	1/1	t0001	336	354	64	68	162	18	40	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	t0002	336	16	16	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	t0003	336	7	7	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	t0004	336	3	3	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	t0005	336	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	t0006	336	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD17_chr17_74351416_74366868	1/1	t0001	291	308	58	63	143	8	34	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	t0002	291	102	10	18	59	2	13	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	t0003	292	32	24	3	0	4	1	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	t0004	291	2	2	0	0	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD18_chr11_57738514_57756819	1/1	t0001	948	346	87	66	141	13	37	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	t0002	948	3	1	1	0	1	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	t0003	948	2	0	0	2	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	t0004	948	1	0	0	1	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	t0005	948	1	0	0	0	0	1	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	t0006	948	1	0	1	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD19_chr1_44803523_44820585	1/0	t0001	2112	48	5	9	22	2	9	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0002	2116	37	2	10	18	0	7	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0003	2112	20	1	5	11	1	2	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0004	2108	19	2	4	10	2	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0005	2116	16	3	0	10	0	3	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/1	t0006	2104	16	3	6	3	1	2	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0007	2108	16	5	3	5	2	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0008	2139	14	0	1	12	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0009	2120	13	0	0	9	2	2	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0010	2143	9	0	2	6	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0011	2124	9	2	2	3	0	2	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0012	2131	8	3	2	3	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0013	2135	7	0	0	5	1	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0014	2113	7	0	2	5	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0015	2147	6	0	1	4	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0016	2131	6	0	2	3	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0017	2104	6	0	3	0	3	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0018	2100	5	0	2	1	0	2	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0019	2124	4	0	1	3	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0020	2120	4	3	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0021	2128	4	0	2	2	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0022	2108	4	3	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0023	2135	4	2	0	2	0	0	copy fasta	BTBD19	chr1	44803523	44820585