JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFSF9_chr19_6526026_6540924	0/0	t0004	869	20	3	3	8	1	5	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	1/0	t0005	870	17	2	1	11	0	2	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0006	867	17	7	10	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0007	869	16	8	5	0	0	3	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0008	872	10	0	0	8	1	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0009	867	10	7	3	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0010	865	8	8	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0011	871	7	0	0	6	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0012	871	7	0	0	7	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0013	870	6	4	0	0	0	2	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0014	865	5	4	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0015	867	5	0	4	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0016	873	4	4	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0017	871	4	1	0	0	0	3	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0018	869	4	3	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0019	872	4	4	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0020	869	3	2	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0021	868	3	3	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0022	873	3	3	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0023	871	3	3	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0024	873	2	2	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0025	872	2	1	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0026	870	2	0	0	2	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0027	871	2	0	0	2	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0028	870	2	0	0	2	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0029	868	2	1	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0030	868	2	1	0	0	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0031	867	2	2	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0032	877	1	1	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0033	873	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0034	873	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0035	871	1	0	0	0	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0036	871	1	0	0	0	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0037	867	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0038	871	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0039	870	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0040	870	1	0	0	0	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0041	869	1	0	0	0	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0042	869	1	0	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0043	867	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0044	867	1	0	0	0	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0045	867	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0046	867	1	0	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0047	871	1	1	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0048	870	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0049	871	1	1	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0050	869	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0051	868	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	t0052	867	1	0	0	0	0	1	copy fasta	TNFSF9	chr19	6526026	6540924
TNF_chr6_31570565_31583336	0/1	t0001	977	385	72	67	187	17	41	copy fasta	TNF	chr6	31570565	31583336