JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNF_chr6_31570565_31583336	0/0	t0002	977	10	7	2	0	1	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	t0003	977	2	0	2	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	t0004	977	1	0	0	1	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	t0005	977	1	0	0	1	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	t0006	1101	1	0	0	1	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	t0007	977	1	0	1	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	t0008	977	1	1	0	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	t0009	977	1	0	0	0	0	1	copy fasta	TNF	chr6	31570565	31583336
TNIK_chr3_171053414_171465405	1/0	t0001	5810	50	23	13	6	1	6	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0002	5812	12	9	3	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0003	5810	9	8	0	1	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0004	5810	7	4	0	1	0	2	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0005	5809	5	5	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0006	5810	4	1	2	0	0	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/1	t0007	5810	2	0	1	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0008	5810	1	0	0	0	0	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0009	5810	1	0	0	0	1	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0010	5810	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0011	5812	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0012	5812	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0013	5812	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0014	5812	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0015	5810	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0016	5812	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0017	5810	1	0	0	1	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0018	5810	1	0	0	1	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0019	5810	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0020	5812	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0021	5812	1	0	1	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	t0022	5812	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIP1_chr5_151024945_151086034	1/0	t0001	960	204	76	18	90	3	16	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/1	t0002	960	140	12	45	61	8	13	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	t0003	960	48	1	7	29	1	10	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	t0004	960	4	4	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	t0005	960	2	0	0	2	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	t0006	960	1	0	0	0	0	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	t0007	960	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	t0008	960	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	t0009	960	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP2_chr4_2736648_2761336	1/1	t0001	657	341	40	72	175	13	39	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	t0002	657	53	35	2	13	0	3	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	t0003	657	20	16	1	0	1	2	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	t0004	657	4	4	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	t0005	657	3	0	1	0	2	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	t0006	657	2	2	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	t0007	657	1	1	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP3_chr4_121126408_121169321	1/1	t0001	1420	106	15	27	39	4	19	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0002	1412	49	19	15	5	5	5	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0003	1422	17	3	2	6	0	6	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0004	1424	12	0	3	9	0	0	copy fasta	TNIP3	chr4	121126408	121169321