JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNIP3_chr4_121126408_121169321	0/0	t0005	1422	10	1	2	4	0	3	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0006	1423	10	10	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0007	1419	8	1	0	6	1	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0008	1426	7	1	5	0	1	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0009	1421	6	2	1	2	0	1	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0010	1422	5	0	3	0	2	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0011	1422	5	5	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0012	1418	4	1	0	2	0	1	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0013	1408	4	4	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0014	1420	4	1	1	0	0	2	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0015	1412	4	4	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0016	1416	3	3	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0017	1414	3	2	0	1	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0018	1416	3	3	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0019	1424	2	1	1	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0020	1416	2	0	0	0	0	2	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0021	1417	2	2	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0022	1415	2	0	0	1	0	1	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0023	1412	2	1	1	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0024	1411	2	2	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0025	1408	2	2	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0026	1425	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0027	1425	1	0	1	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0028	1423	1	0	0	0	1	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0029	1425	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0030	1423	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0031	1421	1	0	0	1	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0032	1420	1	0	0	1	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0033	1421	1	0	0	0	0	1	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0034	1421	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0035	1422	1	0	0	1	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0036	1421	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0037	1420	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0038	1420	1	0	0	1	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0039	1416	1	0	0	0	0	1	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0040	1414	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0041	1414	1	0	0	1	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0042	1410	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0043	1410	1	0	0	0	1	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0044	1424	1	0	0	0	1	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	t0045	1417	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNK1_chr17_7376089_7394742	0/1	t0001	776	253	59	52	101	12	28	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	1/0	t0002	776	115	28	16	61	0	9	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	t0003	776	79	8	18	42	4	7	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	t0004	776	3	3	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	t0005	776	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	t0006	766	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK2_chr3_195858364_195913551	0/1	t0001	903	264	77	63	84	9	30	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	1/0	t0002	903	66	2	7	43	5	8	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0003	903	15	0	2	13	0	0	copy fasta	TNK2	chr3	195858364	195913551