JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNK2_chr3_195858364_195913551	0/0	t0004	903	8	8	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0005	903	7	0	0	7	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0006	903	5	5	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0007	903	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0008	903	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0009	903	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0010	903	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0011	903	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0012	903	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	t0013	903	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNKS1BP1_chr11_57294642_57329952	1/1	t0001	631	326	81	75	108	18	42	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	t0002	631	11	10	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	t0003	631	3	0	0	3	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	t0004	631	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	t0005	631	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	t0006	631	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	t0007	631	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS2_chr10_91793426_91870475	0/0	t0001	2742	105	20	18	50	1	16	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0002	2741	79	10	14	43	0	12	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	1/0	t0003	2742	61	28	14	9	5	4	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/1	t0004	2742	34	14	9	2	4	4	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0005	2742	33	3	1	28	0	1	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0006	2733	4	0	1	0	2	1	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0007	2742	3	3	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0008	2742	3	0	2	0	1	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0009	2742	3	3	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0010	2742	2	0	0	2	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0011	2741	2	2	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0012	2742	2	2	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0013	2742	2	0	0	2	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0014	2742	2	0	0	2	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0015	2742	1	0	0	0	0	1	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0016	2742	1	0	0	0	0	1	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0017	2742	1	1	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0018	2742	1	1	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0019	2742	1	0	0	0	1	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0020	2742	1	0	1	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0021	2742	1	1	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0022	2742	1	0	0	1	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0023	2742	1	1	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0024	2742	1	1	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	t0025	2742	1	0	0	1	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS_chr8_9550912_9787346	0/1	t0001	5638	58	27	14	1	1	14	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	1/0	t0002	5639	48	1	9	25	3	9	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0003	5638	34	6	3	19	0	6	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0004	5638	24	2	13	8	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0005	5638	13	0	5	6	2	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0006	5637	9	6	3	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0007	5638	7	0	0	7	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0008	5638	6	0	1	5	0	0	copy fasta	TNKS	chr8	9550912	9787346