JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNKS_chr8_9550912_9787346	0/0	t0009	5637	6	0	0	1	0	5	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0010	5638	5	5	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0011	5639	5	5	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0012	5637	4	4	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0013	5639	4	0	3	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0014	5638	3	3	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0015	5639	3	3	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0016	5638	2	2	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0017	5638	2	0	0	1	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0018	5639	2	0	0	2	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0019	5639	2	2	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0020	5638	2	2	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0021	5638	1	0	0	0	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0022	5638	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0023	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0024	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0025	5638	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0026	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0027	5638	1	0	1	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0028	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0029	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0030	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0031	5638	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0032	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0033	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0034	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0035	5638	1	0	1	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0036	5638	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0037	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0038	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0039	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0040	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0041	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0042	5638	1	0	0	0	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0043	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0044	5638	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0045	5639	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0046	5638	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0047	5638	1	0	1	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0048	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0049	5638	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0050	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0051	5639	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0052	5639	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	t0053	5639	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNMD_chrX_100579936_100604885	1/1	t0001	252	328	80	58	143	13	32	copy fasta	TNMD	chrX	100579936	100604885
TNNC1_chr3_52446100_52459041	1/1	t0001	202	353	81	80	138	16	36	copy fasta	TNNC1	chr3	52446100	52459041
TNNC1_chr3_52446100_52459041	0/0	t0002	202	8	8	0	0	0	0	copy fasta	TNNC1	chr3	52446100	52459041
TNNC1_chr3_52446100_52459041	0/0	t0003	202	1	1	0	0	0	0	copy fasta	TNNC1	chr3	52446100	52459041
TNNC2_chr20_45818214_45832312	0/1	t0001	199	262	54	46	123	9	29	copy fasta	TNNC2	chr20	45818214	45832312