JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNNC2_chr20_45818214_45832312	1/0	t0002	199	134	26	21	65	7	14	copy fasta	TNNC2	chr20	45818214	45832312
TNNC2_chr20_45818214_45832312	0/0	t0003	199	8	7	1	0	0	0	copy fasta	TNNC2	chr20	45818214	45832312
TNNC2_chr20_45818214_45832312	0/0	t0004	199	6	6	0	0	0	0	copy fasta	TNNC2	chr20	45818214	45832312
TNNC2_chr20_45818214_45832312	0/0	t0005	199	1	0	0	0	0	1	copy fasta	TNNC2	chr20	45818214	45832312
TNNC2_chr20_45818214_45832312	0/0	t0006	199	1	1	0	0	0	0	copy fasta	TNNC2	chr20	45818214	45832312
TNNI1_chr1_201398784_201426730	0/0	t0001	5547	105	4	20	63	2	16	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	1/0	t0002	5547	64	12	11	33	4	3	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0003	5530	55	16	12	20	1	6	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/1	t0004	5529	43	7	14	16	2	3	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0005	5530	37	7	0	29	0	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0006	5547	14	0	11	0	2	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0007	5530	13	0	0	13	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0008	5547	8	6	1	0	0	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0009	5547	7	0	0	0	0	7	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0010	5529	6	6	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0011	5530	6	3	3	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0012	5530	5	5	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0013	5547	5	0	0	5	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0014	5531	5	5	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0015	5529	3	1	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0016	5547	3	0	1	0	2	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0017	5547	3	2	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0018	5530	2	2	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0019	5530	2	0	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0020	5530	2	0	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0021	5530	2	0	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0022	5547	2	0	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0023	5547	2	0	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0024	5547	2	0	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0025	5530	2	1	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0026	5546	2	0	0	1	1	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0027	5547	2	0	0	2	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0028	5548	2	2	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0029	5547	2	2	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0030	5547	2	0	0	0	0	2	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0031	5530	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0032	5530	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0033	5529	1	0	0	0	1	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0034	5529	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0035	5546	1	0	0	0	0	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0036	5529	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0037	5529	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0038	5530	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0039	5547	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0040	5530	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0041	5547	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0042	5547	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0043	5547	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0044	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0045	5547	1	0	0	0	0	1	copy fasta	TNNI1	chr1	201398784	201426730