JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNNI1_chr1_201398784_201426730	0/0	t0046	5529	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0047	5546	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0048	5530	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0049	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0050	5547	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0051	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0052	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0053	5547	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0054	5547	1	0	0	0	0	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0055	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0056	5547	1	0	0	0	0	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0057	5547	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0058	5547	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0059	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0060	5547	1	0	0	0	0	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0061	5547	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0062	5547	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0063	5547	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0064	5530	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0065	5529	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0066	5529	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0067	5530	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0068	5530	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0069	5530	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0070	5530	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0071	5548	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0072	5546	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0073	5547	1	0	0	0	1	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0074	5547	1	0	0	0	0	1	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0075	5530	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0076	5530	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0077	5547	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0078	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0079	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0080	5547	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0081	5548	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0082	5548	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0083	5547	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	t0084	5530	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI2_chr11_1833981_1846678	1/1	t0001	203	448	92	78	215	16	45	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	t0002	203	11	0	8	3	0	0	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	t0003	205	8	8	0	0	0	0	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	t0004	203	1	0	0	0	0	1	copy fasta	TNNI2	chr11	1833981	1846678
TNNI3K_chr1_74230387_74549428	1/1	t0001	512	171	72	32	49	4	12	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	t0002	512	17	16	1	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	t0003	512	2	0	2	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	t0004	512	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	t0005	512	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	t0006	512	1	0	0	1	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	t0007	512	1	0	1	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428