JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNNI3_chr19_55146767_55162732	1/1	t0001	211	348	64	72	151	16	43	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	t0002	211	26	22	3	1	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	t0003	212	9	0	1	6	0	2	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	t0004	211	2	0	0	0	0	2	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	t0005	211	2	2	0	0	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	t0006	211	1	0	0	0	0	1	copy fasta	TNNI3	chr19	55146767	55162732
TNNT1_chr19_55127698_55154206	0/0	t0001	275	185	54	40	66	7	18	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/1	t0002	275	81	21	14	24	4	17	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	1/0	t0003	275	28	5	5	13	1	3	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	t0004	275	21	5	4	12	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	t0005	274	2	1	1	0	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	t0006	275	1	1	0	0	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	t0007	274	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	t0008	275	1	1	0	0	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT2_chr1_201354014_201382680	1/1	t0001	269	434	95	73	208	13	43	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	t0002	269	4	1	2	0	1	0	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	t0003	269	3	0	1	0	2	0	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	t0004	269	1	0	0	0	0	1	copy fasta	TNNT2	chr1	201354014	201382680
TNNT3_chr11_1914703_1943702	1/0	t0001	289	124	38	23	32	8	22	copy fasta	TNNT3	chr11	1914703	1943702
TNNT3_chr11_1914703_1943702	0/0	t0002	289	1	0	1	0	0	0	copy fasta	TNNT3	chr11	1914703	1943702
TNN_chr1_175062833_175153075	0/1	t0001	1143	261	63	51	104	11	31	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	1/0	t0002	1143	54	0	4	37	4	8	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0003	1143	33	13	8	9	1	2	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0004	1143	5	5	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0005	1143	4	3	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0006	1143	3	2	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0007	1143	3	3	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0008	1143	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0009	1143	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0010	1143	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0011	1143	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0012	1143	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0013	1143	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0014	1143	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0015	1143	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	t0016	1143	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNP1_chr2_216854458_216865064	1/1	t0001	240	398	92	64	180	18	42	copy fasta	TNP1	chr2	216854458	216865064
TNP2_chr16_11262857_11274325	1/1	t0001	203	423	92	78	194	16	41	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	t0002	203	1	0	0	0	0	1	copy fasta	TNP2	chr16	11262857	11274325
TNPO1_chr5_72811661_72919388	0/0	t0001	5792	84	11	15	43	2	13	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	1/0	t0002	5793	70	25	12	22	1	9	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0003	5792	32	15	0	17	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/1	t0004	5792	30	2	3	23	1	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0005	5792	21	0	7	5	2	7	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0006	5793	18	17	1	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0007	5793	18	2	6	5	0	5	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0008	5792	6	0	0	6	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0009	5791	4	4	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0010	5792	4	3	1	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0011	5791	2	1	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388